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Re: [ccp4bb] iMosflm in 6.1 under OS X |
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- Protein crystallographyMain steps:- Protein purification- Crystallisation Special:- Programs for crystallography- X-ray detectors Basic tutorials:- Chemistry- Protein - Peptide - Amino Acids Xtal community:- CCP4BB |
CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999Subject: Re: iMosflm in 6.1 under OS X From: Engin Ozkan eozkan {- at -} STANFORD {- dot -} EDU Date: 2008-12-17 Yep, this happened because of the latest Mac OS 10.5.6 update. With the update, my X11 version got downgraded from 2.3.1 to 2.1.5. Engin William G. Scott wrote: > Hi Engin: > > What do you get in response to the command > > otool -L /usr/X11/lib/libXdamage.1.dylib grep "libXdamage.1.dylib" > > You should see > > /usr/X11/lib/libXdamage.1.dylib (compatibility version 3.0.0, current > version 3.0.0) > > If you don't, update X11 here (free) to at least 2.3.1: > > http://xquartz.macosforge.org/trac/wiki > > If you do see what I do, then I suspect you need to unset the evil > $DYLD_LIBRARY_PATH variable > > > Bill > > > > On Dec 17, 2008, at 1:53 PM, Engin Ozkan wrote: > >> By the way, is anyone experiencing the following problem with >> fink-installed coot? >> >> dyld: Library not loaded: /usr/X11/lib/libXdamage.1.dylib >> Referenced from: /sw/bin/coot >> Reason: Incompatible library version: coot requires version 3.0.0 or >> later, but libXdamage.1.dylib provides version 2.0.0 >> >> [1] Trace/BPT trap coot >> >> Engin >> >> William G. Scott wrote: >>> More specifically, issue >>> >>> fink selfupdate-cvs (or fink selfupdate-rsync) >>> fink install itcl itk iwidgets tdom tkimg tktreectrl >>> >>> >>> >>> >>> On Dec 17, 2008, at 7:56 AM, Andrzej Lyskowski wrote: >>> >>>> Hi, >>>> >>>> I've just upgraded my fink distro and was wondering what else has >>>> to be done concerning configuration in order to make the iMosflm >>>> run on Mac OS. >>>> So far I'm getting the following error: >>>> >>>> Error in startup script: unknown namespace in import pattern "itcl::*" >>>> while executing >>>> "namespace import itcl::*" >>>> (file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/src/imosflm.tcl" >>>> line 91) >>>> invoked from within >>>> "source $env(IMOSFLM)" >>>> (file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/imosflm.tcl" line >>>> 111) >>>> >>>> Regards, Andrzej > CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999 |
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