Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] iMosflm in 6.1 under OS X

- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: XAS software
From: Eugenio De la Mora eugenio {- dot -} delamora {- at -} YAHOO {- dot -} COM
Date: 2008-12-17
Next message:
Subject: Re: iMosflm in 6.1 under OS X
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-12-17


Subject: Re: iMosflm in 6.1 under OS X
From: Engin Ozkan eozkan {- at -} STANFORD {- dot -} EDU
Date: 2008-12-17

Yep, this happened because of the latest Mac OS 10.5.6 update. With the
update, my X11 version got downgraded from 2.3.1 to 2.1.5.

Engin

William G. Scott wrote:
> Hi Engin:
>
> What do you get in response to the command
>
> otool -L /usr/X11/lib/libXdamage.1.dylib
grep "libXdamage.1.dylib"
>
> You should see
>
> /usr/X11/lib/libXdamage.1.dylib (compatibility version 3.0.0, current
> version 3.0.0)
>
> If you don't, update X11 here (free) to at least 2.3.1:
>
> http://xquartz.macosforge.org/trac/wiki
>
> If you do see what I do, then I suspect you need to unset the evil
> $DYLD_LIBRARY_PATH variable
>
>
> Bill
>
>
>
> On Dec 17, 2008, at 1:53 PM, Engin Ozkan wrote:
>
>> By the way, is anyone experiencing the following problem with
>> fink-installed coot?
>>
>> dyld: Library not loaded: /usr/X11/lib/libXdamage.1.dylib
>> Referenced from: /sw/bin/coot
>> Reason: Incompatible library version: coot requires version 3.0.0 or
>> later, but libXdamage.1.dylib provides version 2.0.0
>>
>> [1] Trace/BPT trap coot
>>
>> Engin
>>
>> William G. Scott wrote:
>>> More specifically, issue
>>>
>>> fink selfupdate-cvs (or fink selfupdate-rsync)
>>> fink install itcl itk iwidgets tdom tkimg tktreectrl
>>>
>>>
>>>
>>>
>>> On Dec 17, 2008, at 7:56 AM, Andrzej Lyskowski wrote:
>>>
>>>> Hi,
>>>>
>>>> I've just upgraded my fink distro and was wondering what else has
>>>> to be done concerning configuration in order to make the iMosflm
>>>> run on Mac OS.
>>>> So far I'm getting the following error:
>>>>
>>>> Error in startup script: unknown namespace in import pattern "itcl::*"
>>>> while executing
>>>> "namespace import itcl::*"
>>>> (file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/src/imosflm.tcl"
>>>> line 91)
>>>> invoked from within
>>>> "source $env(IMOSFLM)"
>>>> (file "/sw/share/xtal/ccp4-6.1.0/ccp4i/imosflm/imosflm.tcl" line
>>>> 111)
>>>>
>>>> Regards, Andrzej
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: XAS software
From: Eugenio De la Mora eugenio {- dot -} delamora {- at -} YAHOO {- dot -} COM
Date: 2008-12-17
Next message:
Subject: Re: iMosflm in 6.1 under OS X
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-12-17



ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd