Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: New ligand and link interface
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-01-07

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Subject: Re: imosflm in ccp4 6.1.0 in linux problems
From: "John M {- dot -} Berrisford" jmb {- at -} MRC-DUNN {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2009-01-07

Does sourcing the "ccp4-others.setup' (which doesn't appear in the linux
binary distribution which i've installed - very strange) correct the
location of the BLT_LIBRARY in configure.def file stored .CCP4 in the
users home directory.
My configure.def file had a link to an old version of the blt libraries
which was not compatible with imosflm and was causing imosflm invoked
within ccp4i to crash but allowing imosflm to work when run from the
command line (where it picked up the correct version of bltwish).

John

Harry Powell wrote:
> Hi
>
> Sorry - just noticed that "ccp4-others.setup" doesn't seem to be in
> the source distribution, just in the binary distro. My assumption is
> that if you build from source (or install the Mac OS X binary
> installation) , it's not necessary.
>
> On 7 Jan 2009, at 11:54, Phil Evans wrote:
>
>> What is this ccp4-others.setup? I don't have it in my working 6.1.0
>> installation (built from source)
>>
>> Phil
>>
>>
>> On 7 Jan 2009, at 11:50, Harry Powell wrote:
>>
>>> Hi folks
>>>
>>> We have had a good look at this at Mosflm HQ now on Linux.
>>>
>>> The CCP4 TclTk++ distribution seems to work okay, and there's no
>>> need to install the ActiveTcl version to run iMosflm.
>>>
>>> It seems that if you use the CCP4 instructions on the wiki
>>> (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation)
>>> things work okay.
>>>
>>> Bear in mind that there are now *two* include files you need to
>>> source when setting up ccp4 - both ccp4.setup (as before) and
>>> ccp4-others.setup (new).
>>>
>>> I strongly recommend downloading ipmosflm from the Mosflm website
>>> (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html),
>>> since it's built without the (unnecessary) libtermcap dependency -
>>> if you download the "noX11" version you can avoid some rare bugs
>>> that only show up with iMosflm.
>>>
>>> Also, take care to heed Ronan's point about having the ccp4i project
>>> set up *before* running iMosflm from ccp4i, so that the directories
>>> are properly assigned.
>>>
>>> On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote:
>>>
>>>> Dear Paula,
>>>>
>>>> The tcltk++ binary either from the downloads pages or
>>>> ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you
>>>> unpack this somewhere, export CCP4I_TCLTK appropriately and add the
>>>> lib directory to the LD_LIBRARY_PATH it should solve your problem.
>>>> If you would like more detail please don't hesitate to get in
>>>> touch. This works fine on all the 32 and 64 linux systems I have
>>>> tested.
>>>>
>>>> Best wishes,
>>>>
>>>> Graeme
>>>>
>>>>
>>>> -----Original Message-----
>>>> From: CCP4 bulletin board on behalf of Salgado, Paula
>>>> Sent: Tue 1/6/2009 11:03 PM
>>>> To: CCP4BB@JISCMAIL.AC.UK
>>>> Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
>>>>
>>>> Hi everyone
>>>>
>>>> I've been trying to run the new imosflm version from ccp4i 6.1.0
>>>> gui on ubuntu 8.0.4, but keep having problems. After struggling
>>>> with it to search for the correct MOSDIR directory path, it then
>>>> complained it was missing several packages from wish8.4. I did
>>>> manage to find some of them, but after searching the web I still
>>>> can't find:
>>>>
>>>> treectrl 2.1
>>>> img::png 1.3
>>>> img::gif 1.3
>>>> img::jpeg 1.3
>>>>
>>>> can anyone tell me where I can download them or what other
>>>> solutions to get imosflm to run properly?
>>>>
>>>> Thanks a lot
>>>> Paula
>>>
>>> Harry
>>> --
>>> Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre,
>>> Hills Road, Cambridge, CB2 0QH
>
> Harry

--
John Berrisford

Medical Research Council
Dunn Human Nutrition Unit
Wellcome Trust / MRC Building
Hills Road
Cambridge
CB2 0XY
WEB: www.mrc-dunn.cam.ac.uk
Tel: +44 1223 252882

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: New ligand and link interface
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2009-01-07

Next message:
Subject: Re: nVidia Quadro FX3000 on Ubuntu 8.10
From: Pete Meyer pameyer {- at -} MCW {- dot -} EDU
Date: 2009-01-07