[ccp4bb] Program to evaluate RNA torsion angles?

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: Refining alternate ligand/autoinhibition
From: Stefan Arold s {- dot -} arold {- at -} CBS {- dot -} CNRS {- dot -} FR
Date: 2007-05-08

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Subject: Re: Program to evaluate RNA torsion angles?
From: "Das, Debanu" debanu {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-05-08

Subject: Program to evaluate RNA torsion angles?
From: Yuan Lin elam1978 {- at -} HOTMAIL {- dot -} COM
Date: 2007-05-08

Dear All,
I was wonder if anyone knows of a program for evaluating the quality of
nucleic acid torsion angles in a manner comparable to a Ramachandran plot
for proteins? I am working on an A-form dsRNA structure and there are some
deviations from the average torsion angles for A-RNA, due to the
incorporation of an A-bulge. This might be silly, but how could I know
whether those deviations are outrageous or not?

Thanks very much!

Yuan

------------------------
Yuan Lin
Biochemistry and Molecular Biology
Johns Hopkins University
Rm. W8702 BSPH
615 N. Wolfe St.
Baltimore, MD 21205
Ph. 443-287-4988

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Refining alternate ligand/autoinhibition
From: Stefan Arold s {- dot -} arold {- at -} CBS {- dot -} CNRS {- dot -} FR
Date: 2007-05-08

Next message:
Subject: Re: Program to evaluate RNA torsion angles?
From: "Das, Debanu" debanu {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-05-08