[ccp4bb] rmsd calculation

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CCP4bb <-- 2007 <-- May 2007 <-- 10 May 2007

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Subject: Re: CCP4 GUI
From: "Winn, MD (Martyn)" m {- dot -} d {- dot -} winn {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-05-10

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Subject: Re: rmsd calculation. .
From: "Kerr, Iain" Iain {- dot -} Kerr {- at -} STJUDE {- dot -} ORG
Date: 2007-05-10

Subject: rmsd calculation
From: Jenny ruisher {- at -} GMAIL {- dot -} COM
Date: 2007-05-10

Hi, All,

I have a question about rmsd calculation.

I have some pdbs (100 residues ) and these pdbs differ pretty much only the
loop region 40-60. Is there any easy way that I can superimpose the fixed
region ( 1-40,60-100) and then calculate the rmsd for the loop?I need to
calculate for each pair, so if there is any script or program available to
do this quickly, that would be great.

Thanks.

Jenny

CCP4bb navigation

CCP4bb <-- 2007 <-- May 2007 <-- 10 May 2007

Previous message:
Subject: Re: CCP4 GUI
From: "Winn, MD (Martyn)" m {- dot -} d {- dot -} winn {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-05-10

Next message:
Subject: Re: rmsd calculation. .
From: "Kerr, Iain" Iain {- dot -} Kerr {- at -} STJUDE {- dot -} ORG
Date: 2007-05-10