Re: [ccp4bb] Off topic: Coot and shared libraries

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: Off topic: Coot and shared libraries
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2009-02-27

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From: Stephen Weeks stephen {- dot -} weeks {- at -} VERIZON {- dot -} NET
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Subject: Re: Off topic: Coot and shared libraries
From: Paul Emsley paul {- dot -} emsley {- at -} BIOCH {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2009-02-27

Partha Chakrabarti wrote:
> Hi,
>
> I am running a 64 bit Fedora 10 machine and having problems with coot,
> if i say
>
> ldd coot-real
>
> linux-gate.so.1 => (0x55555000)
> libguilegtk-2.0.so.0 => not found
> libgthread-2.0.so.0 => /lib/libgthread-2.0.so.0 (0x00df8000)
> librt.so.1 => /lib/librt.so.1 (0x005f0000)
> libguile.so.17 => not found
> libgmp.so.3 => not found
> libcrypt.so.1 => /lib/libcrypt.so.1 (0x55572000)
> libltdl.so.3 => not found
> libclipper-ccp4.so.2 => not found
> libclipper-cif.so.2 => not found
> libclipper-phs.so.2 => not found
> libclipper-contrib.so.2 => not found
> libclipper-minimol.so.2 => not found
> libclipper-cns.so.2 => not found
> libclipper-mmdb.so.2 => not found
> libclipper-core.so.2 => not found
> libccp4c.so.0 => not found
> librfftw.so.2 => not found
> libfftw.so.2 => not found
> libz.so.1 => /lib/libz.so.1 (0x00769000)
> libssm.so.0 => not found
> libmmdb.so.0 => not found
>
>
> and so on. There were similar problems with imosflm which got fixed
> after installing compat-libstdc++-33.i386 following a suggestion of
> Kay Diederichs. Is there something similar for this case? Or have I
> forgotten to set up some path correctly?
>

$ sed 's/^$coot_real/ldd $coot_real/' bin/coot > bin/coot-ldd
$ bash !$

HTH but this won't address your fundamental problem which I guess is a
missing library to so.

Paul.

p.s. Gordon Brown just walked past the office... Hmm..

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Off topic: Coot and shared libraries
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2009-02-27

Next message:
Subject: Re: Off topic: Mammalian gene expression in E. coli
From: Stephen Weeks stephen {- dot -} weeks {- at -} VERIZON {- dot -} NET
Date: 2009-02-27