Re: [ccp4bb] Broken chain in Pymol display

- Protein crystallography

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Albane le Maire albane {- dot -} lemaire {- at -} CBS {- dot -} CNRS {- dot -} FR
Date: 2009-03-04

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Subject: AW: Broken chain in Pymol display
From: Clemens Steegborn Clemens {- dot -} Steegborn {- at -} RUB {- dot -} DE
Date: 2009-03-04

Subject: Re: Broken chain in Pymol display
From: Herman {- dot -} Schreuder {- at -} SANOFI-AVENTIS {- dot -} COM Herman {- dot -} Schreuder {- at -} SANOFI-AVENTIS {- dot -} COM
Date: 2009-03-04

Hi Joe,

Do you have insertions (e.g. residues 62A, 62B, 62C) or deletions (e.g.
residues 42 and 45) which are connected? These may cause broken
connectivities in pymol. In this case, I would renumber the pdb file and
see how it then displays.

Best regards,
Herman

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Joe Xtal
Sent: Monday, March 02, 2009 5:08 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Broken chain in Pymol display

Hi all,

I tried to display a refined structure (final steps in phenix.refine) in
Pymol, but several places are not connected. BTW, the structure displays
normally in Coot and bond angle and length deviation are below 1.0 and
0.006, respectively.

Thank you,

Joe

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: PhD position available
From: Albane le Maire albane {- dot -} lemaire {- at -} CBS {- dot -} CNRS {- dot -} FR
Date: 2009-03-04

Next message:
Subject: AW: Broken chain in Pymol display
From: Clemens Steegborn Clemens {- dot -} Steegborn {- at -} RUB {- dot -} DE
Date: 2009-03-04