Re: [ccp4bb] Problem with setting up ccp4 gui

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Crystallographer Position Available at Merck Research Laboratories
From: "Soisson, Stephen M" stephen_soisson {- at -} MERCK {- dot -} COM
Date: 2009-03-04

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Subject: Re: Problem with setting up ccp4 gui
From: "Stein, ND (Norman)" norman {- dot -} stein {- at -} STFC {- dot -} AC {- dot -} UK
Date: 2009-03-04

Hi Jan

If they exist, could you please send me any of the .log files in the
following directory:

~/.CCP4/

In particular the file dbhandler.log. These should help to fix the
problem.

Thanks

Norman Stein
CCP4

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Jan Jensen
Sent: 03 March 2009 17:43
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Problem with setting up ccp4 gui

Hi all,
I have been struggling with installing the new CCP4 package. I run
RedHat Enterprise 4 and have previously used older packages with
success. After I untar and run ./install as root everything seems to
install just fine. When I run ccp4i -c to configure I think something
goes wrong or extensions get misdirected. If I try to run all the
scripts to test, they all seem to execute fine.
I have had luck starting the GUI as root or user but when you get to the
part where projekt directories are setup the GUI stops working and
cannot be restarted (showing the message below)

Error in startup script: wrong # args: should be "dbccp4i_open_project
project args"
while executing
"dbccp4i_open_project"
("eval" body line 1)
invoked from within
"eval dbccp4i_open_project $project $args"
(procedure "DbLoadFile" line 12)
invoked from within
"DbLoadFile $project"
(procedure "DbOpenDatabase" line 13)
invoked from within
"DbOpenDatabase $project"
(procedure "DbOpen" line 30)
invoked from within
"DbOpen -init"
(procedure "DbInitialise" line 19)
invoked from within
"DbInitialise"
(procedure "task" line 14)
invoked from within
"task"
("configure" arm line 6)
invoked from within
"switch $system(RUN_MODE)
script {
# Run a script ($CCP4I/scripts/project.script) with parameters from def
file

source [file join $env(CCP4I_..."
(file "/opt/ccp4/ccp4-6.1.0/ccp4i/bin/ccp4i.tcl" line 163)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
(file "/opt/ccp4/ccp4-6.1.0/ccp4i/bin/ccp4i" line 5)

Can anyone help me?

Thanks,

Jan K Jensen, Pl-R, Ph.D.
Post doctoral fellow at University of Illinois at Chicago (UIC)
Laboratory of Peter GW Gettins Department of Biochemistry and Molecular
Genetics MBRB Room 1260 900 S Ashland Chicago Il, 60607
Phone: 312 996 7664 or 773 574 9276 (mobile)
Email: jkj@uic.edu
Homepage: http://www.epernicus.com/jkj

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Nadir T. Mrabet
Sent: Monday, February 16, 2009 12:37 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] PDB protein strucutrues as screen saver

Hi,
You may want to have a look at
http://www.luminorum.com/html/luminorum_ltd___extras.html.
hth
Nadir

--

Pr. Nadir T. Mrabet
Cellular & Molecular Biochemistry
INSERM U-724
Nancy University, School of Medicine
9, Avenue de la Foret de Haye, BP 184
54505 Vandoeuvre-les-Nancy Cedex
France
Phone: +33 (0)3.83.68.32.73
Fax: +33 (0)3.83.68.32.79
E-mail: Nadir.Mrabet@medecine.uhp-nancy.fr

Jayashankar wrote:
> Dear Scientists,
>
> It may be too much...
>
> But as a biophysics student I would like to appreciate and feel happy
> to have pdb structures as my computers screen savers than to have some

> funny and fancy stuffs.
> And it may help me as a motivator to solve my own structures in
future....
>
> I want to ask is there any existing script that grep strucutres one by

> one with one line definition of that structure.
>
>
>
>
> S.Jayashankar
> Research Student
> Institute for Biophysical Chemistry
> Hannover Medical School
> Germany.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Crystallographer Position Available at Merck Research Laboratories
From: "Soisson, Stephen M" stephen_soisson {- at -} MERCK {- dot -} COM
Date: 2009-03-04

Next message:
Subject: Rigaku RUH3R Generator for Free
From: Thomas Schalch schalch {- at -} CSHL {- dot -} EDU
Date: 2009-03-04