Re: [ccp4bb] XDS Viewer

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: XDS Viewer
From: Andrzej Lyskowski alnyds {- at -} GMAIL {- dot -} COM
Date: 2009-03-06

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Subject: Re: ccp4i / refmac issue
From: "Stein, ND (Norman)" norman {- dot -} stein {- at -} STFC {- dot -} AC {- dot -} UK
Date: 2009-03-06

Subject: Re: XDS Viewer
From: Derek Logan derek {- dot -} logan {- at -} MBFYS {- dot -} LU {- dot -} SE
Date: 2009-03-06

Hi Andrzej,

Thanks for the tip. It just seemed to me that since the package
installed as a typical Mac OS X clickable program, then it was meant
to run that way. Thanks also for info about adxv. I wasn't aware that
there was a Mac executable for this program.

Kay, the image I was trying to read was a .mar2560 file frpm the
mar555 flat panel detector, which I had previously processed using XDS.

Cheers
Derek

On Mar 6, 2009, week10, at 8:10, Andrzej Lyskowski wrote:

> Hi,
>
> Once you have a 2cbf in /usr/local/bin and start XDS Viewer from a
> terminal (/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer) it
> seems to work fine.
>
> However for the diffraction image viewing I would suggest adxv. You
> can find it at: http://www.scripps.edu/~arvai/adxv.html.
>
> Andrzej
>
> On 5/3/09 15:21, Derek Logan wrote:
>> Hi,
>>
>> I very recently downloaded and installed the Mac OS X executable of
>> the
>> new XDS Viewer program to inspect diffraction images. I have moved
>> the
>> program to /Applications. It starts up fine, but when I try to load
>> an
>> image it complains:
>>
>> "Cannot open file! For image formats other than ".cbf" you need to
>> install the "2cbf" script. Please make sure you have added it to the
>> executable path."
>>
>> Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh
>> as
>> shell. Is there some confusion between the shell used by XDS Viewer
>> (if
>> any) and my preferred shell? Looking in the XDS Viewer.app
>> directory I
>> can't find any obvious clues.
>>
>> Thanks
>> Derek
>>
>> __________________________________________________________________
>>
>> Derek Logan tel: +46 46 222 1443
>>
>> Associate Professor fax: +46 46 222 4692
>>
>> Molecular Biophysics mob: +46 76 8585 707
>>
>> Centre for Molecular Protein Science
>>
>> Lund University, Box 124, 221 00 Lund, Sweden
>>
>>

__________________________________________________________________
Derek Logan tel: +46 46 222 1443
Associate Professor fax: +46 46 222 4692
Molecular Biophysics mob: +46 76 8585 707
Centre for Molecular Protein Science
Lund University, Box 124, 221 00 Lund, Sweden

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: XDS Viewer
From: Andrzej Lyskowski alnyds {- at -} GMAIL {- dot -} COM
Date: 2009-03-06

Next message:
Subject: Re: ccp4i / refmac issue
From: "Stein, ND (Norman)" norman {- dot -} stein {- at -} STFC {- dot -} AC {- dot -} UK
Date: 2009-03-06