Re: [ccp4bb] ccp4mg can't start

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CCP4bb <-- 2007 <-- May 2007 <-- 16 May 2007

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Subject: Re: ccp4mg can't start
From: Tim Grune tim {- dot -} grune {- at -} SYNCHROTRON {- dot -} VIC {- dot -} GOV {- dot -} AU
Date: 2007-05-16

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Subject: Re: ccp4mg can't start
From: Liz Potterton lizp {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-05-16

Tim & Yanming,

Our first suggestion is to try the latest version (1.0) - a few startup
issues were fixed between the two versions.
Normally I would encourage you to use the python version distributed
with ccp4mg. The C++/Python interface was built against a particular
version of Python and probably will not work with others.

Liz

Tim Grune wrote:
>
> Hi Yanming,
>
>
> it looks like ccp4mg looks for python in a specific path within the
> ccp4mg.
> Edit the script ccp4mg (you find out where it is with 'which ccp4mg').
> Look at the very end of that file
> for where python is called (probably with some arguments). Make sure
> it says only 'python', not anything like
> '/usr/local/ccp4/ccp4mg-0.12.1/bin/..//pythondist/bin/python'. Then
> ccp4mg will use the python of your system. This works for me and
> ccp4mg does not need its own python installation.
>
> Maybe the ccp4mg-developers may want to comment on whether this is a
> bad idea and may have a negative influence on ccp4mg's performance?
>
> Tim
>
> -----Original Message-----
> From: Yanming Zhang
> To: Tim Grune
> Date: Wed, 16 May 2007 01:47:08 -0400 (EDT)
> Subject: Re: [ccp4bb] ccp4mg can't start
>
> Dear Tim,
> Thanks for your help. python 2.4.2 is the version. Following is
> the output
> of ccp4mg -dbx:
> GNU gdb Red Hat Linux (6.3.0.0-1.132.EL4rh)
> Copyright 2004 Free Software Foundation, Inc.
> GDB is free software, covered by the GNU General Public License,
> and you
> are
> welcome to change it and/or distribute copies of it under certain
> conditions.
> Type "show copying" to see the conditions.
> There is absolutely no warranty for GDB. Type "show warranty" for
> details.
> This GDB was configured as
> "i386-redhat-linux-gnu".../usr/local/ccp4/ccp4mg-0.12.1/bin/..//pythondist/bin/python:
>
> No such file or directory.
>
> (gdb) Starting program:
> /usr/local/ccp4/ccp4mg-0.12.1/bin/..//python/ui/ui.py -debug opengl
> command
> No executable file specified.
> Use the "file" or "exec-file" command.
> (gdb) No stack.
> (gdb) No symbol table is loaded. Use the "file" command
>
> Any suggestion?
> Thanks
>
>
> On Wed, 16 May 2007, Tim Grune wrote:
>
> > Hi Yanming,
> >
> > which version of python is running on your system(python -V)?
> Maybe it is too
> > old?
> > Otherwise, does 'ccp4mg -dbx' produce any more output?
> >
> > On Wednesday 16 May 2007 11:20, you wrote:
> >> Dear Tim,
> >> I checked the two files, Both are empty.
> >> Linux distribution: 2.6.9-42.ELsm
> >>
> >> Thanks
> >> Yanming
> >>
> >> On Wed, 16 May 2007, Tim Grune wrote:
> >>> Could you send the contents of the files
> >>> /home/yzhang/.CCP4MG/ccp4mg_stdout.txt
> >>> and
> >>> /home/yzhang/.CCP4MG/ccp4mg_stderr.txt
> >>> What Linux distribution are you using?
> >>>
> >>> Tim
> >>>
> >>> On Wednesday 16 May 2007 10:31, Yanming Zhang wrote:
> >>>> Dear All,
> >>>> lately I have a fantacy toward ccp4mg. But either from
> >>>> ccp4i or typing 'ccp4mg' directly from the prompt(Linux),
> >>>> I got the following error message:
> >>>>
> >>>> Loading fonts..
> >>>> ...DONE
> >>>> Starting graphics thread..
> >>>> ...DONE
> >>>> Parsing command line..
> >>>> ...DONE
> >>>> Redirecting output to /home/yzhang/.CCP4MG/ccp4mg_stdout.txt
> >>>> Redirecting errors to /home/yzhang/.CCP4MG/ccp4mg_stderr.txt
> >>>> Started at Fri May 16 09:16:59 2003
> >>>> /usr/local/ccp4/ccp4mg-0.12.1/bin/ccp4mg: line 281: 10773 Killed
> >>>> python $CCP4_MG/python/ui/ui.py $*
> >>>>
> >>>> Any quick remedy?
> >>>> Thanks
> >>>> Yanming
> >>>
> >>> --
> >>> Tim Grune
> >>> Australian Synchrotron
> >>> 800 Blackburn Road
> >>> Clayton, VIC 3168
> >>> Australia
> >
> > --
> > Tim Grune
> > Australian Synchrotron
> > 800 Blackburn Road
> > Clayton, VIC 3168
> > Australia
> >
>

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CCP4bb <-- 2007 <-- May 2007 <-- 16 May 2007

Previous message:
Subject: Re: ccp4mg can't start
From: Tim Grune tim {- dot -} grune {- at -} SYNCHROTRON {- dot -} VIC {- dot -} GOV {- dot -} AU
Date: 2007-05-16

Next message:
Subject: NOC 3.0 is released
From: chenmengen chenmengen {- at -} YAHOO {- dot -} COM {- dot -} CN
Date: 2007-05-16