[ccp4bb] Fix for MIFit8 compatibility issue with CCP4 6.1.1

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From: peter hudson peter {- dot -} hudson {- dot -} peter {- at -} GMAIL {- dot -} COM
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Subject: Re: Fix for MIFit8 compatibility issue with CCP4 6.1.1
From: Donnie Berkholz dberkholz {- at -} GENTOO {- dot -} ORG
Date: 2009-04-01

Subject: Fix for MIFit8 compatibility issue with CCP4 6.1.1
From: John Badger jbadger1 {- at -} SAN {- dot -} RR {- dot -} COM
Date: 2009-04-01

The automated cocrystal solution pipeline and refinement applications in
MIFit8 ( http://code.google.com/p/mifit/ ) employs arp_waters for water-
picking and some automated error detection. However, arp_waters is
deprecated in CCP4 6.1.1.

For now, one solution (Linux or Windows) is simply to copy the arp_waters
binary from /bin in CCP4 6.0.* to /bin in CCP4 6.1.1.

Thanks to Martyn Winn for also reminding that on Linux the source code for
arp_waters is still available and may still be built

>Actually, it has not gone entirely, but was moved to the deprecated
> folder:
>
> $CCP4/deprecated/src/arp_waters_
>
> If you type "make" in $CCP4/deprecated/src you should get it back.

We are examining alternatives for water-picking that workable in the context
of automated refinement and are not aware of any other incompatibilities at
this time.

Thanks
John Badger

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: curvature of a helix
From: peter hudson peter {- dot -} hudson {- dot -} peter {- at -} GMAIL {- dot -} COM
Date: 2009-04-01

Next message:
Subject: Re: Fix for MIFit8 compatibility issue with CCP4 6.1.1
From: Donnie Berkholz dberkholz {- at -} GENTOO {- dot -} ORG
Date: 2009-04-01