[ccp4bb] How to run ccp4 in php script?

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Post-doctoral position Edwards lab University of Leeds
From: Thomas Edwards T {- dot -} A {- dot -} Edwards {- at -} LEEDS {- dot -} AC {- dot -} UK
Date: 2007-05-20

Next message:
Subject: Re: How to run ccp4 in php script?
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2007-05-21

Subject: How to run ccp4 in php script?
From: yang li robertcatrukie {- at -} GMAIL {- dot -} COM
Date: 2007-05-21

Hi All,
I have some scripts which need to use some programs--like cad,
refmac--in ccp4, and I want to
use a php script to run these scripts, with command as : $cmd =" sh
aa.inp"; system($cmd);
As I know, when I use php script, the account is Apache, which is a
nologin account, all the files I used
are put in the directory which belong to Apache.I donnot know what shell it
uses, assume it uses bash,
since Apache has no permission to /ccp4/include/ccp4.setup, I copied
ccp4.setup to the directory I used.
And add a line in the script to source this ccp4.setup, file, but it gives
such error information:
********************* WARNING ********************** The directory
/home/prog/ccp4 (assigned to CCP4_MASTER) does not exist. The CCP4 programs
will not run correctly, and any installation attempt will have errors or
will fail. ********************* WARNING **********************
I donnot know how to solve this problem. Anyone knows how to run the
ccp4 programs with the php script?

Thanks!

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Post-doctoral position Edwards lab University of Leeds
From: Thomas Edwards T {- dot -} A {- dot -} Edwards {- at -} LEEDS {- dot -} AC {- dot -} UK
Date: 2007-05-20

Next message:
Subject: Re: How to run ccp4 in php script?
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2007-05-21