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Re: [ccp4bb] Molecular Replacement of a Known Anomalous Substructure

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: calc. of rots to align recip. space axes w/ beam
From: Jim Pflugrath jim {- dot -} pflugrath {- at -} RIGAKU {- dot -} COM
Date: 2007-05-21
Next message:
Subject: Re: twwining operator
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-05-22


Subject: Re: Molecular Replacement of a Known Anomalous Substructure
From: "Murray, James W" j {- dot -} w {- dot -} murray {- at -} IMPERIAL {- dot -} AC {- dot -} UK
Date: 2007-05-22



Dear All,

The authors of the following paper used molecular replacement of the substructure to locate the heavy atoms. The known 11-fold symmetry meant that the heavy atoms had to be in a circle - molecular replacement with circles of different radii did the trick.

Antson et al. Nature, Vol. 374 (1995), pp. 693-700.

You simply need to use the DANO field of the mtz instead of the intensities if using anomalous data. I have found the known Se substructure by molecular replacement this way as a proof-of-principle (after finding the substructure with shelxd). Whether molecular replacement of the substructure is in general a useful thing to do is another question, modern software is extremely good at locating heavy atom sites.

James

Dr. James Murray
Biochemistry Building
Department of Biological Sciences
Imperial College London
London, SW7 2AZ
Tel: +44 (0)20 7594 5276




Dr. James Murray
Biochemistry Building
Department of Biological Sciences
Imperial College London
London, SW7 2AZ
Tel: +44 (0)20 7594 5276



CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: calc. of rots to align recip. space axes w/ beam
From: Jim Pflugrath jim {- dot -} pflugrath {- at -} RIGAKU {- dot -} COM
Date: 2007-05-21
Next message:
Subject: Re: twwining operator
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-05-22



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