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CCP4BB messages from July 2010

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

This page contains all CCP4 Bulletin Board messages from July 2010

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CCP4bb <-- 2010

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CCP4bb messages from 01 July 2010

Subject: Re: UV microscope
From: Ho Leung Ng ho {- at -} CONFOMETRX {- dot -} COM
Date: 2010-07-01

Subject: fsck problem.
From: tarique khan tariquekhan {- dot -} nii {- at -} GMAIL {- dot -} COM
Date: 2010-07-01

Subject: Re: Wilson B and Mean B factors
From: Dirk Kostrewa kostrewa {- at -} GENZENTRUM {- dot -} LMU {- dot -} DE
Date: 2010-07-01

Subject: Re: fsck problem.
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-01

Subject: Ph.D. studentship in Durham
From: "POHL E {- dot -} " ehmke {- dot -} pohl {- at -} DURHAM {- dot -} AC {- dot -} UK
Date: 2010-07-01

Subject: Welcome to the new PDBe website (pdbe.org)!
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2010-07-01

Subject: Re: vacuum adapter for Dry shipper Cryo Dewar
From: Kris Tesh kris {- dot -} tesh {- at -} ATT {- dot -} NET
Date: 2010-07-01

Subject: OFF TOPIC: Akta Prime + Hg lamp replacement
From: Yu Wai Chen yu-wai {- dot -} chen {- at -} KCL {- dot -} AC {- dot -} UK
Date: 2010-07-01

Subject: ccp4MG quits - mac
From: Regina Kettering reginakettering {- at -} YAHOO {- dot -} COM
Date: 2010-07-01

Subject: Re: UV microscope
From: "Prince, D Bryan" DBryan {- dot -} Prince {- at -} ASTRAZENECA {- dot -} COM
Date: 2010-07-01

Subject: Project Leader Electron Microscopy - position available at PDBe
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2010-07-01

Subject: Viscotoxin A1 S-SAD example data
From: Bernhard Rupp br {- at -} RUPPWEB {- dot -} ORG
Date: 2010-07-01

CCP4bb messages from 02 July 2010

Subject: Re: Density changes from Positive to negative after ligand addition and refinement
From: xaravich ivan xaravich {- dot -} ivan {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Which is the better way to combine the dataset from different crystals?
From: Fengyun Ni alpharyun {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Re: Which is the better way to combine the dataset from different crystals?
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-02

Subject: Re: ccp4MG quits - mac
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-02

Subject: Odd loop stabilised by an cation
From: Domen Zafred zafred {- dot -} ccp4 {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Odd loop stabilised by an cation
From: Domen Zafred zafred {- dot -} ccp4 {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: attachments
From: Ed Pozharski epozh001 {- at -} UMARYLAND {- dot -} EDU
Date: 2010-07-02

Subject: BIOCRYS 2010 - Registration Reminder
From: Colin McVey mcvey {- at -} ITQB {- dot -} UNL {- dot -} PT
Date: 2010-07-02

Subject: Re: attachments
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

Subject: Re: attachments
From: "Frances C {- dot -} Bernstein" fcb {- at -} BERNSTEIN-PLUS-SONS {- dot -} COM
Date: 2010-07-02

Subject: Re: Odd loop stabilised by an cation
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Ian Tickle ianjt05 {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Re: attachments
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

Subject: Re: attachments
From: Frederic VELLIEUX frederic {- dot -} vellieux {- at -} ORANGE {- dot -} FR
Date: 2010-07-02

Subject: Re: attachments
From: Ethan Merritt merritt {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Ethan Merritt merritt {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Sean Seaver sean {- at -} P212121 {- dot -} COM
Date: 2010-07-02

Subject: Re: attachments
From: Douglas Jacobsen djacobse {- at -} UMICH {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

Subject: Re: attachments
From: Flip Hoedemaeker flip {- at -} FORMULATRIX {- dot -} COM
Date: 2010-07-02

Subject: Re: attachments
From: James Stroud xtald00d {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Re: attachments
From: Nat Echols nathaniel {- dot -} echols {- at -} GMAIL {- dot -} COM
Date: 2010-07-02

Subject: Re: attachments
From: David Schuller djs63 {- at -} CORNELL {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Ed Pozharski epozh001 {- at -} UMARYLAND {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

Subject: Re: attachments
From: Ed Pozharski epozh001 {- at -} UMARYLAND {- dot -} EDU
Date: 2010-07-02

Subject: Re: attachments
From: "George M {- dot -} Sheldrick" gsheldr {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

Subject: Re: attachments
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-02

CCP4bb messages from 03 July 2010

Subject: Elspeth Garman's husband
From: Frank von Delft frank {- dot -} vondelft {- at -} SGC {- dot -} OX {- dot -} AC {- dot -} UK
Date: 2010-07-03

Subject: Re: attachments
From: Kay Diederichs kay {- dot -} diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2010-07-03

Subject: monomeric coiled coil
From: aidong ahan {- at -} XMU {- dot -} EDU {- dot -} CN
Date: 2010-07-03

Subject: Re: attachments
From: Kay Diederichs kay {- dot -} diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2010-07-03

Subject: Another vote for PINE.
From: Robert Sweet sweet {- at -} BNL {- dot -} GOV
Date: 2010-07-03

Subject: Re: monomeric coiled coil
From: chern chern {- at -} UALBERTA {- dot -} CA
Date: 2010-07-03

Subject: Re: monomeric coiled coil
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2010-07-03

CCP4bb messages from 04 July 2010

Subject: Re: attachments
From: Javier Gonzalez biojmg {- at -} GMAIL {- dot -} COM
Date: 2010-07-04

Subject: Re: monomeric coiled coil--updated
From: aidong ahan {- at -} XMU {- dot -} EDU {- dot -} CN
Date: 2010-07-04

Subject: Re: Elspeth Garman's husband
From: Raji Edayathumangalam raji {- at -} BRANDEIS {- dot -} EDU
Date: 2010-07-04

Subject: Re: monomeric coiled coil--updated
From: chern chern {- at -} UALBERTA {- dot -} CA
Date: 2010-07-04

Subject: Re: monomeric coiled coil
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2010-07-04

CCP4bb messages from 05 July 2010

Subject: OFF: Intein-chitin purification method
From: Petr Kolenko kolenko {- at -} IMC {- dot -} CAS {- dot -} CZ
Date: 2010-07-05

Subject: Re: OFF: Intein-chitin purification method
From: Vellieux Frederic Frederic {- dot -} Vellieux {- at -} IBS {- dot -} FR
Date: 2010-07-05

Subject: Re: OFF: Intein-chitin purification method
From: Petr Kolenko kolenko {- at -} IMC {- dot -} CAS {- dot -} CZ
Date: 2010-07-05

Subject: Re: monomeric coiled coil
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2010-07-05

Subject: Re: monomeric coiled coil
From: Mark Agacan M {- dot -} Agacan {- at -} DUNDEE {- dot -} AC {- dot -} UK
Date: 2010-07-05

Subject: Re: monomeric coiled coil--updated
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2010-07-05

CCP4bb messages from 06 July 2010

Subject: imosflm conflict with mosflm (OS X/fink 32-bit)
From: Engin_Özkan eozkan {- at -} STANFORD {- dot -} EDU
Date: 2010-07-06

Subject: Re: imosflm conflict with mosflm (OS X/fink 32-bit)
From: Harry Powell harry {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-06

Subject: Re: Elspeth Garman's husband
From: "Prince, D Bryan" DBryan {- dot -} Prince {- at -} ASTRAZENECA {- dot -} COM
Date: 2010-07-06

Subject: Re: imosflm conflict with mosflm (OS X/fink 32-bit)
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2010-07-06

Subject: Re: imosflm conflict with mosflm (OS X/fink 32-bit)
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2010-07-06

Subject: Re: Postdoctoral position in Houston
From: RaDaniel Christian ì„±ì¤€ rendereason {- at -} GMAIL {- dot -} COM
Date: 2010-07-06

Subject: post-doctoral position
From: Steve Bruner bruner {- at -} UFL {- dot -} EDU
Date: 2010-07-06

Subject: R values are higher in SF-CHECK
From: Rakesh Joshi rjoshi {- at -} PURDUE {- dot -} EDU
Date: 2010-07-06

Subject: Re: R values are higher in SF-CHECK
From: Dirk Kostrewa kostrewa {- at -} GENZENTRUM {- dot -} LMU {- dot -} DE
Date: 2010-07-06

Subject: Re: R values are higher in SF-CHECK
From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV
Date: 2010-07-06

Subject: Re: imosflm conflict with mosflm (OS X/fink 32-bit)
From: Engin_Özkan eozkan {- at -} STANFORD {- dot -} EDU
Date: 2010-07-06

CCP4bb messages from 07 July 2010

Subject: Post-doctoral position at the Institute of Cancer Research, London, U.K.
From: Dale Wigley dale {- dot -} wigley {- at -} CANCER {- dot -} ORG {- dot -} UK
Date: 2010-07-07

Subject: Re: imosflm conflict with mosflm (OS X/fink 32-bit)
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2010-07-07

Subject: How to orient molecules in pymol according to the crystal orientation during data collection?
From: Anja Pomowski apomows {- at -} GWDG {- dot -} DE
Date: 2010-07-07

Subject: Re: How to orient molecules in pymol according to the crystal orientation during data collection?
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-07

Subject: HIGH B ANISOTROPIC VALUES
From: Rakesh Joshi rjoshi {- at -} PURDUE {- dot -} EDU
Date: 2010-07-07

Subject: Re: How to orient molecules in pymol according to the crystal orientation during data collection?
From: A Leslie andrew {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-07

Subject: Re: HIGH B ANISOTROPIC VALUES
From: Frederic VELLIEUX frederic {- dot -} vellieux {- at -} ORANGE {- dot -} FR
Date: 2010-07-07

Subject: Calculate the portion of the density within a mask
From: Hailiang Zhang zhangh1 {- at -} UMBC {- dot -} EDU
Date: 2010-07-07

Subject: Introducing PDBeXplore - a browser of structural knowledge
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2010-07-07

CCP4bb messages from 08 July 2010

Subject: Question about R/Rfree value difference
From: Sampath Natarajan sams76 {- at -} GMAIL {- dot -} COM
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: jbosch jubosch {- at -} JHSPH {- dot -} EDU
Date: 2010-07-08

Subject: idiffdisp - two clicks to define a line does not work on a sector ?
From: Boaz Shaanan bshaanan {- at -} BGU {- dot -} AC {- dot -} IL
Date: 2010-07-08

Subject: Re: Calculate the portion of the density within a mask
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2010-07-08

Subject: Re: Question about R/Rfree value difference
From: Tom Oldfield oldfield {- at -} EBI {- dot -} AC {- dot -} UK
Date: 2010-07-08

Subject: Postdoctoral Opportunity at Pfizer Cambridge, MA
From: "Bard, Joel" Joel {- dot -} Bard {- at -} PFIZER {- dot -} COM
Date: 2010-07-08

Subject: Twin questions: is my crystals twinned or not?
From: Parthasarathy Sampathkumar spartha2 {- at -} GMAIL {- dot -} COM
Date: 2010-07-08

Subject: Re: Twin questions: is my crystals twinned or not?
From: Anastassis Perrakis a {- dot -} perrakis {- at -} NKI {- dot -} NL
Date: 2010-07-08

Subject: Re: Twin questions: is my crystals twinned or not?
From: Ethan Merritt merritt {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2010-07-08

Subject: Beginning crystallography text
From: Peter Hsu hsuuper {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2010-07-08

Subject: Re: Beginning crystallography text
From: Thomas Juettemann juettemann {- at -} GMAIL {- dot -} COM
Date: 2010-07-08

Subject: Re: Beginning crystallography text
From: Patrick Loll pat {- dot -} loll {- at -} DREXEL {- dot -} EDU
Date: 2010-07-08

Subject: RES: Beginning crystallography text
From: JÃºlio CÃ©sar jsilva {- at -} LNLS {- dot -} BR
Date: 2010-07-08

Subject: Re: Beginning crystallography text
From: "Prince, D Bryan" DBryan {- dot -} Prince {- at -} ASTRAZENECA {- dot -} COM
Date: 2010-07-08

Subject: Re: Beginning crystallography text
From: Robert Sweet sweet {- at -} BNL {- dot -} GOV
Date: 2010-07-08

Subject: Computational Crystallography Newsletter - Issue 1
From: Paul Adams pdadams {- at -} LBL {- dot -} GOV
Date: 2010-07-08

Subject: Re: Computational Crystallography Newsletter - Issue 1
From: Harry harry {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-08

Subject: Red pigmentation of B834 Auxotrophic E. coli cells
From: Jim Fairman fairman {- dot -} jim {- at -} GMAIL {- dot -} COM
Date: 2010-07-08

CCP4bb messages from 09 July 2010

Subject: How to make fft-map more physically meaningful?
From: Hailiang Zhang zhangh1 {- at -} UMBC {- dot -} EDU
Date: 2010-07-09

Subject: Re: Beginning crystallography text
From: Ho Leung Ng ho {- at -} CONFOMETRX {- dot -} COM
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: "Edward A {- dot -} Berry" BerryE {- at -} UPSTATE {- dot -} EDU
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2010-07-09

Subject: Re: Beginning crystallography text
From: Bernhard Rupp br {- at -} RUPPWEB {- dot -} ORG
Date: 2010-07-09

Subject: Re: Deglycosylation enzymes
From: Shaun Lott s {- dot -} lott {- at -} AUCKLAND {- dot -} AC {- dot -} NZ
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: Alexandre Urzhumtsev sacha {- at -} IGBMC {- dot -} FR
Date: 2010-07-09

Subject: 8th International NCCR Symposium on New Trends in Structural Biology
From: Patrick Sticher sticher {- at -} BIOC {- dot -} UZH {- dot -} CH
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: Harry Powell harry {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2010-07-09

Subject: Re: Beginning crystallography text
From: Nic Steussy csteussy {- at -} PURDUE {- dot -} EDU
Date: 2010-07-09

Subject: Re: Question about R/Rfree value difference
From: Dirk Kostrewa kostrewa {- at -} GENZENTRUM {- dot -} LMU {- dot -} DE
Date: 2010-07-09

Subject: passing away of Dr Denis Verger
From: Vellieux Frederic Frederic {- dot -} Vellieux {- at -} IBS {- dot -} FR
Date: 2010-07-09

Subject: Fwd: postdocs
From: Schertler Gebhard gebhard {- dot -} schertler {- at -} PSI {- dot -} CH
Date: 2010-07-09

Subject: Mysterious density
From: Nick Quade Nick {- dot -} Quade {- at -} HELMHOLTZ-HZI {- dot -} DE
Date: 2010-07-09

Subject: Re: Mysterious density
From: Vellieux Frederic Frederic {- dot -} Vellieux {- at -} IBS {- dot -} FR
Date: 2010-07-09

Subject: Re: Mysterious density
From: Paula Lario plario {- at -} GMAIL {- dot -} COM
Date: 2010-07-09

Subject: Re: Mysterious density
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2010-07-09

Subject: One PhD position and one Postdoc position available in structural virology
From: Frank Lee crystallize2004 {- at -} YAHOO {- dot -} COM
Date: 2010-07-09

Subject: oasis4 window or redhat x64 bit
From: venkat vkabas {- at -} YAHOO {- dot -} COM
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: Hailiang Zhang zhangh1 {- at -} UMBC {- dot -} EDU
Date: 2010-07-09

Subject: Re: How to make fft-map more physically meaningful?
From: James Holton JMHolton {- at -} LBL {- dot -} GOV
Date: 2010-07-09

Subject: Free mounting system ,Resolution improvement
From: Manoj Saxena mks131 {- at -} REDIFFMAIL {- dot -} COM
Date: 2010-07-09

Subject: Re : Re: How to make fft-map more physically meaningful?
From: Alexandre OURJOUMTSEV sacha {- at -} IGBMC {- dot -} FR
Date: 2010-07-09

CCP4bb messages from 10 July 2010

Subject: Re: Wilson B and Mean B factors
From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV
Date: 2010-07-10

Subject: Re: Wilson B and Mean B factors
From: Peter Zwart PHZwart {- at -} LBL {- dot -} GOV
Date: 2010-07-10

Subject: Question about the "MStats" utiliy in UPPSALA-mapman
From: Hailiang Zhang zhangh1 {- at -} UMBC {- dot -} EDU
Date: 2010-07-10

Subject: Re: Question about the "MStats" utiliy in UPPSALA-mapman
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2010-07-10

Subject: Re: Beginning crystallography text
From: John R Helliwell jrhelliwell {- at -} GMAIL {- dot -} COM
Date: 2010-07-10

Subject: Re: Beginning crystallography text
From: Vineet Gaur vineetgaur1982 {- at -} GMAIL {- dot -} COM
Date: 2010-07-10

Subject: FMS and resolution improvement thanks
From: Manoj Saxena mks131 {- at -} REDIFFMAIL {- dot -} COM
Date: 2010-07-10